.. _changelog: ========= Changelog ========= Git master branch ================= .. CHANGELOG HOWTO. To add an entry to the changelog, create a file named _.rst inside the ase/changelog.d/ directory. Timestamp should be at least YYYYMMDD. You can also install scriv (https://pypi.org/project/scriv/) and run "scriv create" to do this automatically, if you do this often. Edit the file following a similar style to other changelog entries and try to choose an existing section for the release note. For example ase/changelog.d/20250108_amber_fix_velocities.rst with contents: Calculators ----------- - Amber: Fix scaling of velocities in restart files (:mr:`3427`) For each release we generate a full changelog which is inserted below. .. scriv-auto-changelog-start 2026-02-18 ========== I/O --- - Accelerate :func:`~ase.io.lammpsrun.read_lammps_dump_text` using a NumPy structured array (:mr:`3939`) - Accelerate :func:`~ase.io.lammpsrun.read_lammps_dump_text` and :func:`~ase.io.lammpsrun.read_lammps_dump_binary` by parsing the data file only for necessary frames (:mr:`3959`, :mr:`3972`) - Modified :func:`~ase.io.vasp.write_vasp_xdatcar` to print the header, including the cell, for every image (:mr:`2873`) - Fixed a bug in CASTEP .phonon file reader: q-points beyond the first were not loaded. - Added missing unit tests for CASTEP .phonon reader Calculators Optimizers ---------- - Change the default method for :class:`~ase.mep.neb.NEB` to ``'improvedtangent'`` (previously ``'aseneb'``). Molecular dynamics ------------------ - Bug fix in Bussi dynamics: Would crash with GPAW calculator due to random number not being properly synchronized. (:mr:`!3976`) GUI --- - Users can now specify default values for the movie box in the GUI, through their '~/.ase/gui.py' settings file. - Move and Rotate modes no longer turn on if no atoms are selected. - An indicator is added to the bottom right corner that shows that a movement mode is active. This indicator also includes a contextual hint about modifier keys. - Rotation vectors are transformed to give a more intuitive pitch/yaw/roll experience in rotate mode which is also consistent with mouse movements. - Number fields in the GUI can now do basic arithmetic using Python syntax. - Default radii for atoms in ~/.ase/gui.py can now be specified as a dictionary. Both the list and dictionary syntaxes now support using atomic symbols as an alternative to atomic numbers. Documentation ------------- - The updated :ref:`tutorials` based on sphinx-gallery are now the main tutorials. - Move Partly occupied Wannier Functions tutorial to sphinx gallery Other changes ------------- - Calls to spglib adapted to support the `future change of error handling `__ in spglib 2.8+. Bugfixes -------- - Fixed :meth:`ase.optimize.optimize.Optimizer.todict` to return :py:obj:`None` for ``restart`` when not set (:mr:`3923`) - Ctrl/Shift key handling is refactored in the GUI to try and combat a bug where Num Lock would continuously register as a modifier. This was causing the arrow keys to behave incorrectly in "Move" and "Rotate" modes. - Fixed :class:`~ase.spectrum.band_structure.BandStructure` legend plotting for figures with multiple axes (:mr:`3935`) - Fixed :class:`~ase.spectrum.band_structure.BandStructure` to save the figure associated with the axes (:mr:`3935`) - Make MolecularDynamics.run() return a boolean value. - Fix :func:`~ase.io.lammpsrun.read_lammps_dump_text` and :func:`~ase.io.lammpsrun.read_lammps_dump_binary` to interpret ``index`` with negative ``start`` / ``stop`` / ``step`` correctly (:mr:`3959`, :mr:`3972`) - Fixed :func:`~ase.io.vasp.read_vasp_xml` to get not the enthalpy but the energy without PV to be consistent with :func:`~ase.io.vasp.read_vasp_out` (:mr:`2685`) - Fixed a bug where graphs could not be rendered when launching the GUI via IPython/Jupyter - Setting the default radii for atoms in ~/.ase/gui.py works once again. - Introduced checks to ensure no PBCs are used in Thermochemistry when calculating rotational moments of inertia. Also warn user if trying to use :func:`~ase.atoms.get_moments_of_inertia` when PBCs are present. (:mr:`3953`) Version 3.27.0 ============== Thermochemistry --------------- - Multiple changes to the :mod:`~ase.thermochemistry` module (:mr:`3358`): * **Breaking change**: The ``vib_energies`` property of thermochemistry classes is now deprecated. It will still be around for a while until all classes moved to the new modes-based framework. Adapt your workflows accordingly. See also below for more details on the new modes-based framework. * Major parts of the thermochemistry module have been rewritten to include a range of new methods: :class:`MSRRHOThermo` based on the modified rigid-rotor-harmonic-oscillator (msRRHO) approximation by Grimme *et al.* (:doi:`10.1002/chem.201200497` and :doi:`10.1039/D1SC00621E`) and Otlyotov and Minenkov :doi:`10.1002/jcc.27129`. * A new base class for thermochemistry, :class:`ase.thermochemistry.ThermoBase`, has been introduced to facilitate the implementation of new thermochemistry methods. * Multiple classes are now based on a framework of individual modes rather than just a list of vibrational energies. This allows for a flexible mixing of different treatments of vibrational modes (e.g., Grimme's msRRHO for low-frequency modes and harmonic oscillator for high-frequency modes). Each vibrational mode is represented by an instance of the :class:`ase.thermochemistry.AbstractMode` class or one of its subclasses. Multiple modes are then used to build a :class:`ase.thermochemistry.BaseThermoChem` instance or one of its subclasses. The old way of passing a list of vibrational energies is still supported for backwards compatibility, but it is recommended to switch to the new modes-based framework. The ``vib_energies`` property is still available for backwards compatibility, but it is recommended to use the ``modes`` property instead, which returns a list of mode instances. I/O --- - Add support for reading Mulliken charges in :meth:`~ase.io.gamess_us.read_gamess_us_out` and :meth:`~ase.io.gamess_us.read_gamess_us_punch` (:mr:`3761`) - Add support to parse general triclinic boxes in :meth:`~ase.io.lammpsdata.read_lammps_data`, :meth:`~ase.io.lammpsrun.read_lammps_dump_text`, and :meth:`~ase.io.lammpsrun.read_lammps_dump_binary` (:mr:`3797`) - Add support for reading the energy and the dipole moment from "external" in :meth:`ase.io.gaussian.read_gausian_out` (:mr:`3801`) - ASE now follows the EON convention for handling cell geometries. - Update :meth:`~ase.io.lammpsdata.write_lammps_data` to parse atom types read by :meth:`~ase.io.lammpsdata.read_lammps_data` (:mr:`3847`) - **Breaking** Trajectories and logfiles passed as filenames are not kept open during simulations. Instead, the file is opened, written to (generally by appending), then closed again. This improves IO safety and prevents resource leaks in many cases. It is still possible to pass trajectories and logfiles that are already open, and then the caller is responsible for closing them. Doing so may be beneficial in fast runs on slow file systems. (:mr:`3899`, :mr:`3930`) - Updated :func:`~ase.io.lammpsdata.read_lammps_data` and :func:`~ase.io.lammpsdata.write_lammps_data` to parse ``Atom Type Labels`` (:mr:`3916`) Calculators ----------- - Add LAMMPSlib features to support arbitrary startup flags (e.g. to enable kokkos) and arbitrary initialization callbacks (e.g. calling `lammps.mliap.activate_mliappy`) - The `Vasp` calculator now has a more generic way of handling pseudopotentials. If the user specifies the `pp_version` keyword argument or equivalent `VASP_PP_VERSION` environment variable, the calculator will look for pseudopotentials in the corresponding VASP-provided pseudopotential directory. Simply download the pseudopotential folders provided by VASP and put them in one parent directory, defined by `VASP_PP_PATH`. If `pp_version` is `None` (default), the `Vasp` calculator will only look for `potpaw` (LDA) and `potpaw_PBE` (PBE) to maintain backwards compatability. If `pp_version="64"` (for instance), the calculator will look for pseudopotentials in the `potpaw.64` and `potpaw_PBE.64`, respectively. - The `potpaw_GGA` (PW91) pseudpotential folder has been removed. This means setting `xc="PW91"` will no longer use the deprecated PW91 pseudopotential folder. It is recommended the PBE pseudopotentials are used for the PW91 functional instead. - Updated :class:`~ase.calculators.lammpsrun.LAMMPS` to recognize the LAMMPS ``velocity`` command (:mr:`3805`) Optimizers ---------- - All optimizers (except GPMin) can now work with flat position and gradient arrays. - Gradients now have the correct sign in the Optimizable API. The Optimizable API is still experimental and may change. (:mr:`3908`) Molecular dynamics ------------------ - The "NPT" thermostat has been renamed to "MelchionnaNPT" for clearer comparison with alternatives, and to avoid giving the impression that this is a generally recommended default choice for NPT. For backward compatibility an :class:`ase.md.npt.NPT` class remains in place, which aliases the renamed class at its new location :class:`ase.md.melchionna.MelchionnaNPT`. The alias is marked as "deprecated" and will be removed in a future ASE version. - New LangevinBAOAB variable-cell Langevin integrator with Leimkhler's BAOAB method GUI --- - Added a history feature, i.e. undo/redo, to the ASE GUI. Documentation ------------- - Move database introduction tutorial to sphinx gallery - Move Surface adsorption study using the ASE database tutorial to sphinx gallery - Move Move "Calculating Delta-values tutorial" to examples/deltacodesdft sphinx gallery Other changes ------------- - Fixed backward-compatibility of :class:`~ase.constraints.FixedLine` and :class:`~ase.constraints.FixedPlane` made before ASE 3.23.0 to be read with :meth:`~ase.constraints.dict2constraint` after ASE 3.23.0 (:mr:`3786`) * ASE now requires Python 3.10+. - Fix deprecated SQL syntax :mr:`3815`. - Added :meth:`ase.lattice.match_to_lattice` which matches an input cell to a specific Bravais lattice and returns a list of matching representations. - The :mod:`ase.ga` module has been moved to the standalone `ase-ga `__ project. - Improved efficiency of :func:`~ase.geometry.rdf.get_rdf` using :class:`~ase.neighborlist.NeighborList` (:mr:`3888`) Bugfixes -------- - Remove subscripting of images iterable in extxyz writer so it works with non-subscriptable iterables when "move_mask" key is present in `atoms.arrays` (:mr:`3795`) - Fix :func:`~ase.io.extxyz.write_extxyz` to ignore constraints other than :class:`~ase.constraints.FixAtoms` and :class:`~ase.constraints.FixCartesian` when ``move_mask`` is present in ``columns`` (default since ASE 3.26.0) (:mr:`3808`) - Fix :func:`~ase.io.extxyz.write_extxyz` to handle multiple :class:`~ase.constraints.FixAtoms` correctly (:mr:`3812`) - Fix :func:`~ase.io.extxyz.write_extxyz` to handle unconstrained atoms in :class:`~ase.Atoms` with :class:`~ase.constraints.FixCartesian` correctly (:mr:`3812`) - Make :class:`~ase.calculators.vasp.Vasp` calculator INCAR reader use first instance of each tag, to be same as VASP code itself (:mr:`3842`) - Fix constraints from first frame being applied to all frames (leading to errors) in :func:`~ase.io.extxyz.write_extxyz` (:mr:`3920`) - Fixed partial RDFs in :func:`~ase.geometry.rdf.get_rdf` to be conssitent with the common definition in, e.g., LAMMPS ``compute rdf`` (:mr:`3921`) - Fixed :class:`~ase.calculators.lammpsrun.LAMMPS` to be robust against LAMMPS log files with non-ASCII characters (:mr:`3925`) - Fixed :class:`~ase.calculators.lammpsrun.LAMMPS` to not run the default `fix nve` command when users set `fix` explicitly (:mr:`3805`) Version 3.26.0 ============== I/O --- - Added communicator argument to parprint, which defaults to world if None, analogous as for paropen - Added single float encoding for :mod:`~ase.io.jsonio` (:mr:`3682`) - Changed :func:`~ase.io.extxyz.write_extxyz` to store :class:`~ase.constraints.FixAtoms` and :class:`~ase.constraints.FixCartesian` by default without explicitly specifying ``move_mask`` in ``columns`` (:mr:`3713`) - **Breaking change**: Removed IOFormat.open() method. It is untested and appears to be unused. :mr:`3738` - Fix :func:`~ase.io.vasp.read_vasp` to correctly read both atomic and lattice velocities if present in POSCAR (:mr:`3762`) Calculators ----------- - Added per-atom ``energies`` consistent with LAMMPS to :class:`~ase.calculators.tersoff.Tersoff` (:mr:`3656`) - Added toggles between analytical and numerical forces/stress in :class:`~ase.calculators.fd.FiniteDifferenceCalculator` (:mr:`3678`) - Added calculators ``mattersim`` and ``mace_mp`` to the ``get_calculator()`` function - Changed :class:`~ase.calculators.elk.ELK` based on :class:`~ase.calculators.GenericFileIOCalculator` (:mr:`3736`) - DFTD3 no longer warns about systems that are neither 3D periodic nor 0D, because there is no way to adapt the code that resolves the condition warned about. (:mr:`3740`) Optimizers ---------- - Logfile and trajectory inputs now accept both string and Path objects. - **Breaking change:** The :class:`~ase.utils.abc.Optimizable` interface now works in terms of arbitrary degrees of freedom rather than Cartesian (Nx3) ones. Please note that the interface is still considered an internal feature and may still change significantly. (:mr:`3732`) Molecular dynamics ------------------ - Added anisotropic NpT with MTK equations (:mr:`3595`). - Fixed bug in Nose-Hoover chain thermostat which would inconsistently update extended variables for the thermostat. GUI --- - Atomic spins can now be visualized as arrows - Mouse button 2 and 3 are now equivalent in the GUI, which simplifies life on particularly MacOS (:mr:`3669`). - Menu shortcut keys now work as expected on MacOS. - In Rotate and Translate mode, Ctrl + arrow key now works as intended on MacOS. Left alt and Command now have the same effect (:mr:`3669`). - Changed Alt+X, Alt+Y, Alt+Z to Shift+X, Shift+Y, Shift+Z to view planes from "other side" - Changed views into basis vector planes to I, J, K, Shift+I, Shift+J, Shift+K - Added general window to view and edit data on atoms directly in the same style as the cell editor. The window currently edits symbols and Cartesian positions only (:mr:`3790`). Development ----------- - Enable ruff on all scripts inside documentation Documentation ------------- - Web page now uses sphinx book theme (:mr:`3684`). - Documentation moved to `ase-lib.org `_. Other changes ------------- - Removed ``Quaternions`` (subclass of ``Atoms``). The ``quaternions`` read from a LAMMPS data file is still accessible as an array in ``Atoms``. (:mr:`3709`) - Re-added the ``spin`` option of :meth:`~ase.spectrum.band_structure.BandStructurePlot.plot` to plot only the specified spin channel (:mr:`3726`) Bugfixes -------- - Fixed :class:`~ase.calculators.tersoff.Tersoff` to compute properties correctly (:mr:`3653`, :mr:`3655`, :mr:`3657`). - Enable :func:`ase.io.magres.read_magres` to handle cases from CASTEP < 23 where indices and labels are "munged" together if the index exceeds 99. If an index exceeds 999 the situation remains ambiguous and an error will be raised. (:mr:`3530`) - Fix duplicated transformation (e.g. rotation) of symmetry labels in :func:`~ase.dft.bz.bz_plot` (:mr:`3617`). - Fixed bug in :class:`io.utils.PlottingVariables` where automatic bounding boxes were incorrectly centered due the image center not being scaled for paper space (:mr:`3769`). - Fixed bug in :class:`io.pov.POVRAY` where unspecified image (canvas) dimensions would use defaults with an incorrect aspect ratio (:mr:`3769`). Structure tools --------------- - Added ``score_key='metric'`` to :func:`~ase.build.find_optimal_cell_shape` for scoring a cell based on its metric tensor (:mr:`3616`) Version 3.25.0 ============== I/O --- - Moved Postgres, MariaDB and MySQL backends to separate project: https://gitlab.com/ase/ase-db-backends. Install from PyPI with ``pip install ase-db-backends`` (:mr:`3545`). - **BREAKING** ase.io.orca ``read_orca_output`` now returns Atoms with attached properties. ``ase.io.read`` will use this function. The previous behaviour (return results dictionary only) is still available from function ``read_orca_outputs``. (:mr:`3599`) - Added :func:`~ase.io.castep.write_castep_geom` and :func:`~ase.io.castep.write_castep_md` (:mr:`3229`) - Fixed :mod:`ase.data.pubchem` module to convert ``#`` in SMILES to HEX ``%23`` for URL (:mr:`3620`). - :mod:`ase.db`: Unique IDs are now based on UUID rather than pseudorandom numbers that could become equal due to seeding (:mr:`3614`). - :mod:`ase.db`: Fix bug where unique_id could be converted to float or int (:mr:`3613`). - Vasp: More robust reading of CHGCAR (:mr:`3607`). - Lammpsdump: Read timestep from lammpsdump and set element based on mass (:mr:`3529`). - Vasp: Read and write velocities (:mr:`3597`). - DB: Support for LMDB via `ase-db-backends` project (:mr:`3564`, :mr:`3639`). - Espresso: Fix bug reading `alat` in some cases (:mr:`3562`). - GPAW: Fix reading of total charge from text file (:mr:`3519`). - extxyz: Somewhat restrict what properties are automatically written (:mr:`3516`). - Lammpsdump: Read custom property/atom LAMMPS dump data (:mr:`3510`). Calculators ----------- - More robust reading of Castep XC functional (:mr:`3612`). - More robust saving of calculators to e.g. trajectories (:mr:`3610`). - Lammpslib: Fix outdated MPI check (:mr:`3594`). - Morse: Optionally override neighbor list implementation (:mr:`3593`). - EAM: Calculate stress (:mr:`3581`). - A new Calculator :class:`ase.calculators.tersoff.Tersoff` has been added. This is a Python implementation of a LAMMPS-style Tersoff interatomic potential. Parameters may be passed directly to the calculator as a :class:`ase.calculators.tersoff.TersoffParameters` object, or the Calculator may be constructed from a LAMMPS-style file using its ``from_lammps`` classmethod. (:mr:`3502`) Optimizers ---------- - Fix step counting in the :class:`~ase.optimize.cellawarebfgs.CellAwareBFGS` (:mr:`3588`). - Slightly more efficient/robust GoodOldQuasiNewton (:mr:`3570`). Molecular dynamics ------------------ - Merged ``self.communicator`` into ``self.comm`` (:mr:`3631`). - Improved random sampling in countour exploration (:mr:`3643`). - Fix small energy error in Langevin dynamics (:mr:`3567`). - Isotropic NPT with MTK equations (:mr:`3550`). - Bussi dynamics now work in parallel (:mr:`3569`). - Improvements to documentation (:mr:`3566`). - Make Nose-Hoover chain NVT faster and fix domain decomposition with Asap3 (:mr:`3571`). - NPT now works with cells that are upper or lower triangular matrices (:mr:`3277`) aside from upper-only as before. - Fix inconsistent :meth:`irun` for NPT (:mr:`3598`). GUI --- - Fix windowing bug on WSL (:mr:`3478`). - Added button to wrap atoms into cell (:mr:`3587`). Development ----------- - Changelog is now generated using ``scriv`` (:mr:`3572`). - CI cleanup; pypi dependencies in CI jobs are now cached (:mr:`3628`, :mr:`3629`). - Maximum automatic pytest workers reduced to 8 (:mr:`3628`). - Ruff formatter to be gradually enabled across codebase (:mr:`3600`). Other changes ------------- - :meth:`~ase.cell.Cell.standard_form` can convert to upper triangular (:mr:`3623`). - Bugfix: :func:`~ase.geometry.geometry.get_duplicate_atoms` now respects pbc (:mr:`3609`). - Bugfix: Constraint masks in cell filters are now respected down to numerical precision. Previously, the constraints could be violated by a small amount (:mr:`3603`). - Deprecate :func:`~ase.utils.lazyproperty` and :func:`~ase.utils.lazymethod` since Python now provides :func:`functools.cached_property` (:mr:`3565`). - Remove ``nomad-upload`` and ``nomad-get`` commands due to incompatibility with recent Nomad (:mr:`3563`). - Fix normalization of phonon DOS (:mr:`3472`). - :class:`~ase.io.utils.PlottingVariables` towards rotating the camera rather than the atoms (:mr:`2895`). .. scriv-auto-changelog-end Version 3.24.0 ============== Requirements ------------ * The minimum supported Python version has increased to 3.9 (:mr:`3473`) * Support numpy 2 (:mr:`3398`, :mr:`3400`, :mr:`3402`) * Support spglib 2.5.0 (:mr:`3452`) Atoms ----- * New method :func:`~ase.Atoms.get_number_of_degrees_of_freedom()` (:mr:`3380`) * New methods :func:`~ase.Atoms.get_kinetic_stress()`, :func:`~ase.Atoms.get_kinetic_stresses()` (:mr:`3362`) * Prevent truncation when printing Atoms objects with 1000 or more atoms (:mr:`2518`) DB -- * Ensure correct float format when writing to Postgres database (:mr:`3475`) Structure tools --------------- * Add atom tagging to ``ase.build.general_surface`` (:mr:`2773`) * Fix bug where code could return the wrong lattice when trying to fix the handedness of a 2D lattice (:mr:`3387`) * Major improvements to :func:`~ase.build.find_optimal_cell_shape`: improve target metric; ensure rotationally invariant results; avoid negative determinants; improved performance via vectorisation (:mr:`3404`, :mr:`3441`, :mr:`3474`). The ``norm`` argument to :func:`~ase.build.supercells.get_deviation_from_optimal_cell_shape` is now deprecated. * Performance improvements to :class:`ase.spacegroup.spacegroup.Spacegroup` (:mr:`3434`, :mr:`3439`, :mr:`3448`) * Deprecated :func:`ase.spacegroup.spacegroup.get_spacegroup` as results can be misleading (:mr:`3455`). Calculators / IO ---------------- * Amber: Fix scaling of velocities in restart files (:mr:`3427`) * Amber: Raise an error if cell is orthorhombic (:mr:`3443`) * CASTEP - **BREAKING** Removed legacy ``read_cell`` and ``write_cell`` functions from ase.io.castep. (:mr:`3435`) - .castep file reader bugfix for Windows (:mr:`3379`), testing improved (:mr:`3375`) - fix read from Castep geometry optimisation with stress only (:mr:`3445`) * EAM: Fix calculations with self.form = "eam" (:mr:`3399`) * FHI-aims - make free_energy the default energy (:mr:`3406`) - add legacy DFPT parser hook (:mr:`3495`) * FileIOSocketClientLauncher: Fix an unintended API change (:mr:`3453`) * FiniteDifferenceCalculator: added new calculator which wraps other calculator for finite-difference forces and strains (:mr:`3509`) * GenericFileIOCalculator fix interaction with SocketIO (:mr:`3381`) * LAMMPS - fixed a bug reading dump file with only one atom (:mr:`3423`) - support initial charges (:mr:`2846`, :mr:`3431`) * MixingCalculator: remove requirement that mixed calculators have common ``implemented_properties`` (:mr:`3480`) * MOPAC: Improve version-number parsing (:mr:`3483`) * MorsePotential: Add stress (:mr:`3485`) * NWChem: fixed reading files from other directories (:mr:`3418`) * Octopus: Improved IO testing (:mr:`3465`) * ONETEP calculator: allow ``pseudo_path`` to be set in config (:mr:`3385`) * Orca: Only parse dipoles if COM is found. (:mr:`3426`) * Quantum Espresso - allow arbitrary k-point lists (:mr:`3339`) - support keys from EPW (:mr:`3421`) - Fix path handling when running remote calculations from Windows (:mr:`3464`) * Siesta: support version 5.0 (:mr:`3464`) * Turbomole: fixed formatting of "density convergence" parameter (:mr:`3412`) * VASP - Fixed a bug handling the ICHAIN tag from VTST (:mr:`3415`) - Fixed bugs in CHG file writing (:mr:`3428`) and CHGCAR reading (:mr:`3447`) - Fix parsing POSCAR scale-factor line that includes a comment (:mr:`3487`) - Support use of unknown INCAR keys (:mr:`3488`) - Drop "INCAR created by Atomic Simulation Environment" header (:mr:`3488`) - Drop 1-space indentation of INCAR file (:mr:`3488`) - Use attached atoms if no atom argument provided to :func:`ase.calculators.vasp.Vasp.calculate` (:mr:`3491`) GUI --- * Refactoring of :class:`ase.gui.view.View` to improve API for external projects (:mr:`3419`) * Force lines to appear black (:mr:`3459`) * Fix missing Alt+X/Y/Z/1/2/3 shortcuts to set view direction (:mr:`3482`) * Fix incorrect frame number after using Page-Up/Page-Down controls (:mr:`3481`) * Fix incorrect double application of ``repeat`` to ``energy`` in GUI (:mr:`3492`) Molecular Dynamics ------------------ * Added Bussi thermostat :class:`ase.md.bussi.Bussi` (:mr:`3350`) * Added Nose-Hoover chain NVT thermostat :class:`ase.md.nose_hoover_chain.NoseHooverChainNVT` (:mr:`3508`) * Improve ``force_temperature`` to work with constraints (:mr:`3393`) * Add ``**kwargs`` to MolecularDynamics, passed to parent Dynamics (:mr:`3403`) * Support modern Numpy PRNGs in Andersen thermostat (:mr:`3454`) Optimizers ---------- * **BREAKING** The ``master`` parameter to each Optimizer is now passed via ``**kwargs`` and so becomes keyword-only. (:mr:`3424`) * Pass ``comm`` to BFGS and CellAwareBFGS as a step towards cleaner parallelism (:mr:`3397`) * **BREAKING** Removed deprecated ``force_consistent`` option from Optimizer (:mr:`3424`) Phonons ------- * Fix scaling of phonon amplitudes (:mr:`3438`) * Implement atom-projected PDOS, deprecate :func:`ase.phonons.Phonons.dos` in favour of :func:`ase.phonons.Phonons.get_dos` (:mr:`3460`) * Suppress warnings about imaginary frequencies unless :func:`ase.phonons.Phonons.get_dos` is called with new parameter ``verbose=True`` (:mr:`3461`) Pourbaix (:mr:`3280`) --------------------- * New module :mod:`ase.pourbaix` written to replace :class:`ase.phasediagram.Pourbaix` * Improved energy definition and diagram generation method * Improved visualisation Spectrum -------- * **BREAKING** :class:`ase.spectrum.band_structure.BandStructurePlot`: the ``plot_with_colors()`` has been removed and its features merged into the ``plot()`` method. Misc ---- * Cleaner bandgap description from :class:`ase.dft.bandgap.GapInfo` (:mr:`3451`) Documentation ------------- * The "legacy functionality" section has been removed (:mr:`3386`) * Other minor improvements and additions (:mr:`2520`, :mr:`3377`, :mr:`3388`, :mr:`3389`, :mr:`3394`, :mr:`3395`, :mr:`3407`, :mr:`3413`, :mr:`3416`, :mr:`3446`, :mr:`3458`, :mr:`3468`) Testing ------- * Remove some dangling open files (:mr:`3384`) * Ensure all test modules are properly packaged (:mr:`3489`) Units ----- * Added 2022 CODATA values (:mr:`3450`) * Fixed value of vacuum magnetic permeability ``_mu0`` in (non-default) CODATA 2018 (:mr:`3486`) Maintenance and dev-ops ----------------------- * Set up ruff linter (:mr:`3392`, :mr:`3420`) * Further linting (:mr:`3396`, :mr:`3425`, :mr:`3430`, :mr:`3433`, :mr:`3469`, :mr:`3520`) * Refactoring of ``ase.build.bulk`` (:mr:`3390`), ``ase.spacegroup.spacegroup`` (:mr:`3429`) Earlier releases ================ Releases earlier than ASE 3.24.0 do not have separate release notes and changelog. Their changes are only listed in the :ref:`releasenotes`.